Package index
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SMASH_to_wide_table() - Converts SMASH (SampleName, Marker, Allele, Size, Height) data to a wide table
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allele_specific_stutter_model() - Stutter model where the expected stutter rate depends on the allele and locus
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drop_model() - Defines a (semi-continuous) drop model
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gamma_model() - Defines a gamma model for peak height variability
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gf_configuration() - Stutters and size regressions for a GlobalFiler 3500 kit
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global_stutter_model() - Global stutter model where the expected stutter rate is constant across alleles and loci
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kits - Properties such as loci, dye, sizes for most standard forensic kits
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log_normal_model() - Defines a log normal model for peak height variability
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read_STRmix_kit_settings() - Read STRmix Kit Settings
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read_allele_freqs() - Read allele frequencies in FSIgen format (.csv)
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read_size_regression() - Reads a size regression file
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read_stutter_exceptions() - Reads a stutter exceptions file with overrides for expected stutter ratios
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read_stutter_regression() - Reads a stutter regression file
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read_wide_table() - Read wide table (.txt) with Allele1, Allele2, ... columns as is
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sample_LSAE() - Sample Locus Specific Amplification Efficiency (LSAE) according to prior
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sample_contributor_genotypes() - Sample genotypes for mixture contributors according to allele frequencies
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sample_drop_model() - Sample drop model(s) with parameters according to priors
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sample_gamma_model() - Sample gamma model(s) with parameters according to priors
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sample_genotype() - Sample a genotype according to allele frequencies
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sample_log_normal_model() - Sample log normal model(s) with parameters according to priors
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sample_log_normal_parameters() - Sample log normal model parameters according to priors
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sample_log_normal_stutter_variance() - Sample log normal stutter variance parameters according to priors
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sample_many_pedigree_genotypes() - Sample (many) genotypes for pedigree members according to allele frequencies by allele dropping and possibly taking linkage into account by simulating recombination.
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sample_mixture_from_genotypes() - Sample mixture profile with provided genotypes
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sample_mixtures() - Sample mixtures with random genotypes and random parameters according to priors
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sample_mixtures_fixed_parameters() - Sample mixtures with known genotypes and fixed parameters
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sample_mixtures_from_genotypes() - Sample mixtures with known genotypes and random parameters according to priors
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sample_offspring() - Sample offspring from two parental genotypes
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sample_pedigree_genotypes() - Sample genotypes for pedigree according to allele frequencies by allele dropping.
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stutter_type() - Defines a stutter type to be used in the allele specific stutter model.